My Research
old work includes (temp_c++3, MULTIproteING)
collaboration ( ProtLib (docs) , ProtLib (source))
Research Centers
Europian Bioinformatics Institute
Computational Biology Research Center (Japan)
Computational Biology Service Unit (Cornell Theory Center)
Protein Folding People
Folding Groups
Folding Groups 2
Baker Lab (U of Washington)
Fleming Lab (John Hopkins)
Sali Lab (UCSF)
Andrzej Kolinski's Lab (Warsaw Univ., Poland)
Meller Group (Cincinnati Children's Hospital)
Jeffrey Skolnick (Georgia Tech)
Abrams' multiscale group for polymers
Roux Lab (U.Chicago)
Clote Lab
Karypis Lab
Protein Docking People
Docking sitesIon Channels
Protein Prediction Competitions
CASP Competition (runs every even year)
CASP7 targets
CASP6 targets
CASP5 targets
CAPRI: Critical Assessment of PRediction of Interactions
Protein Databases
Molecular Class-Specific Information System (including: GPCRDB, NucleaRDB, PrionDB, KChannelDB, GPCRIPDB)
Membrane Protein Database
The Protein Coil Library
DASSD (dihedral angle and secondary structure database)
Protein Ligand Databases
PDB (protein database)
Protein Classes
Protein Viewers
MolViZ.Org
Atlas of Protein Side-Chain Interactions
Lots of links to protein related research!!! Review on Free Molecular Graphics Software for Windows
List of Molecular 3D Modeling Programs
Servers (very big list)
Online Analysis Tools
Molecular Biology Resorce
DBAli (Sali)
PAPIA (retrieve PDB list by criteria)
UCLA-DOE Servers
Reconstruction of SC and BB from CA-trace
Amino Acid 1<-->3 letter code converter
Frequency count of amino acids in sequence
YASSPP (secondary structure prediction)
pKa Calculations (list)
H++ (protonation and pKa)
PDB2PQR file conversion
PROPKA (pKa values)
Other
Expasy (2 sequence alignment)
Solvent accessible area from given pdb file
Hydropathicity Plots
Protein Information Resource
VEGA Converts PDB files in other formats and vice versa
Secondary structure prediction of proteins from a sequence
POPS Server (Calculates Accessible Surface Areas)
Gert Vriend
Go model builder
DLOOP (loop scoring function)